MmuEX0041440 @ mm10
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26428140-26429123:-
Coord C1 exon
chr2:26429062-26429123
Coord A exon
chr2:26428815-26428953
Coord C2 exon
chr2:26428140-26428385
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGTGTTCATTCTCTCCCCAGAGA
3' ss Score
9.42
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
ACCTTGCTGCAGCACACACCTGAGCAGGAAGAGATGCGCTCCTTCCCAGGACCTCTCGGCAA
Seq A exon
AGATGATACCCACAAAGTAGATGTTATTAACTTTGCACAGAACAAAGCAACAAAATGTTTGCAGAATGAAAGTTTAATTGATAAAGAGTCTGCAAGTCTTCTTTGGAAATTCATTATTCTGTTATGCAGACAGAATGGG
Seq C2 exon
ACTGTTGTGGGAACAGACATTGCAGAGCTTTTGTTACGGGACCATAGAACTGTATGGCTTCCTGGGAAGTCACCCAATGAGGCAAACCTGATAGATTTTACCAATGAGGCTGTGGAACAAGTGGAAGAGGAGGAGTCAGGGGAGGCCCAGCTCTCATTTCTCACAGACAGTCAGACAGTGACCACCAGCGTGCTGGAGAAGGAGACTGAGCGGTTCCGTGAGCTCTTGCTGTATGGCCGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'24-22,'24-20,26-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=0.043 C2=0.158
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.4=100)
A:
PF129322=Sec16=FE(44.7=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.2=13.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAAGAGATGCGCTCCTTC
R:
TCAGTCTCCTTCTCCAGCACG
Band lengths:
247-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types