BtaEX6047206 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103951559-103952456:-
Coord C1 exon
chr11:103952395-103952456
Coord A exon
chr11:103952150-103952288
Coord C2 exon
chr11:103951559-103951798
Length
139 bp
Sequences
Splice sites
3' ss Seq
AGCGTGTGTTCTTTTTGCAGAGA
3' ss Score
9.49
5' ss Seq
GGGGTACGT
5' ss Score
7.73
Exon sequences
Seq C1 exon
ACCTTGCTGCAGCATACACCAGAGCAGGAGGAGATGCGGGCCTTCCCAGGACCTCTCGGCAA
Seq A exon
AGATGAGACCCATAAAGTGGATGTTATTAATTTTGCACAGAACAAGGCTACAAAGTGTTTGCAGAATGAAAACTTAATAGACAAAGAGTCTGCGAGTCTTCTCTGGAGCTTTATTGTCCTGCTGTGCAGGCAGAACGGG
Seq C2 exon
ACCGTGGTGGGCACAGACATTGCAGAGCTCTTGTTACGAGACCACCGAACCGTGTGGCTTCCTGGGAAGTCGCCGAATGAGGCCAACCTGATCGATTTCACCAACGAGGCTGTGGAGCAGGCGGAGGAGGAGGAGTCCGGCGAGGCCCAGCTCTCATTCCTCACGGACAGTCAGGCCGCCAGCACCCTCGAGAAAGACACAGAGCGGTTCCGGGAGCTGCTGCTCTATGGCCGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'14-14,'14-12,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.064 C2=0.287
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.4=100)
A:
PF129322=Sec16=FE(44.7=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.2=13.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCAGAGCAGGAGGAGATG
R:
GTGTCTTTCTCGAGGGTGCTG
Band lengths:
247-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]