GgaEX6015428 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8550213-8551107:+
Coord C1 exon
chr17:8550213-8550274
Coord A exon
chr17:8550481-8550619
Coord C2 exon
chr17:8550865-8551107
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTGTCTCATTTTTCTTTCAGAGA
3' ss Score
10.9
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
ACTATGTTGCAGCATTCTCCAGAGCAAGAAGAGATGAGAGCTTTTCCTGGTCCTCTTGCTAA
Seq A exon
AGATGACACCCATAAAGTGGACGTTATTAACTTTGCACAAAATAAAGCTACACAATGTTTTAAAAATGAAAATTTAATTGACAAAGAATCTGCAAGTCTGCTTTGGGACTTCATTGTACTGCTGTGCAGGCAGAACGGG
Seq C2 exon
ACTGTTGTGGGAACAGACCTGGCTGAACTTCTGCTCCGAGATCATAAAACAGTGTGGCTTCCTGGGAAGTCCCCTAATGAAGCAAACTTAATTGATTTCACTAATGAGGCTTTGGAACAAGTAGAGGAGGAATCTGGTGAAGCCCAGCTCTCATTTCTCACTGATAGTCTTATAACCACAATTGACAGTCTGGAGAAAGAAACAGAGAGATTCAGAGAGTTGCTGCTTTATGGACGTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.4=100)
A:
PF129322=Sec16=FE(44.7=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.1=13.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCATTCTCCAGAGCAAG
R:
TCTCCAGACTGTCAATTGTGGT
Band lengths:
251-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]