DreEX6043081 @ danRer10
Exon Skipping
Gene
ENSDARG00000063300 | si:ch1073-385i9.2
Description
si:ch1073-385i9.2 [Source:ZFIN;Acc:ZDB-GENE-131127-512]
Coordinates
chr16:52075161-52078376:-
Coord C1 exon
chr16:52078315-52078376
Coord A exon
chr16:52078076-52078214
Coord C2 exon
chr16:52075161-52075397
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCTTGTGTGTGTGTCCACAGAGA
3' ss Score
10.85
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACGCTCCTGCAGGATTCTCCAGAGCAGTCAGACATGCGTTCATTCCCAGGCCCGCTGGTCAA
Seq A exon
AGAGGAGACTCATAAGGTGGATGTCATGAAGTTTGCTCAGAACAAAGCCCAAGAGTGTTTGCGAAACGATGACCTCATCGACAAAGACTCCGCCTACCTCATCTGGGAGTTCATTGTGCTGCTGTGTCGCCAGAATGGG
Seq C2 exon
ACCGTAGTGGGTACAGATATTGCTGACCTGCTGCTGAAGGAGCATCGCTCTGTGTGGTTGCCAGGAAAATCACCCAATGAGGCCAATCTCATTGACTTTAACAATGAGGCAATAGAGCATGCAGAAGAAGACATGGGGCAAATGTCCCTCCTATCAGACACGTTCATGGGTGTGCCTGAAAATATTGGCAAGGATACGGAGCGCTTCAGAGAACTACTGCTGTTTGGCCGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063300-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAGTCAGACATGCGTT
R:
CTGAAGCGCTCCGTATCCTTG
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]