RnoEX0078955 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3874464-3875476:-
Coord C1 exon
chr3:3875415-3875476
Coord A exon
chr3:3875169-3875307
Coord C2 exon
chr3:3874464-3874709
Length
139 bp
Sequences
Splice sites
3' ss Seq
GGTGTTCATTCTTTCCCCAGAGA
3' ss Score
8.59
5' ss Seq
GGGGTATGT
5' ss Score
7.48
Exon sequences
Seq C1 exon
ACCTTGCTGCAGCACACACCTGAGCAGGAAGAAATGCGCTCCTTCCCAGGACCTCTCGGCAA
Seq A exon
AGATGACACTCACAAAGTAGATGTTATTAACTTTGCACAAAACAAAGCGACAAAATGTTTGCAGAATGAAAGTTTAATTGACAAAGAGTCTGCAAGTCTTCTTTGGAACTTCATTATTCTGTTATGCAGACAGAATGGG
Seq C2 exon
ACCGTCGTGGGAACAGACATCGCAGAGCTCTTGTTACGGGACCATAGAACTGTGTGGCTTCCTGGGAAGTCACCCAACGAGGCAAACCTGATAGATTTTACCAATGAGGCTGTGGAGCAAGTGGAAGAGGAGGAGTCAGGGGAGGCCCAGCTCTCATTTCTCACAGACAGTCAGACAGTGACCAGCAGTGTGCTGGAGAAGGAGACTGAGCGGTTCCGTGAACTCTTGCTGTACGGTCGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'16-17,'16-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.043 C2=0.171
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.4=100)
A:
PF129322=Sec16=FE(44.7=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.2=13.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATGCGCTCCTTCCCAG
R:
AACCGCTCAGTCTCCTTCTCC
Band lengths:
249-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]