GgaEX0005939 @ galGal4
Exon Skipping
Gene
ENSGALG00000004424 | SEC16B
Description
protein transport protein Sec16B [Source:RefSeq peptide;Acc:NP_001026440]
Coordinates
chr8:6600306-6602312:+
Coord C1 exon
chr8:6600306-6600367
Coord A exon
chr8:6601449-6601584
Coord C2 exon
chr8:6602088-6602312
Length
136 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTTGCTGCCGTAGGGA
3' ss Score
9.32
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTAATCCTTCAAGGCACAACAGATCAGGAGGAGCTTCAGGCCTTCCCAGGGCCTCTGGCCAG
Seq A exon
GGAAGATCTGCACAAAGTAGATGTGATGACATTTTGCCAGCAAAAGATAGCCTCAAGCTGTGATCTCTCAACACAGAGAGGCAGAGATTCAGCTCTTCTCTGGAAACTCCTGGTCCTCCTGTGCCGACAGAATGGG
Seq C2 exon
TCCATGGTGGGCTCGGACGTGGCGGAGCTGCTGATGCAGGACTGCAGGCAGCAGGAGAGGTACAAGAGGCAGGAGCCGGCGGTGGGCCCCGTCAGCCTGGCAGATGAGGAGTGGCGTCAACTGGGGACACTGGACCTCATCACAGGGGAAGTCCCTCCTGTGGTAGAGACACAGGCACAGATAGTGGAGAAGTTCACCAAGCTCCTCTACTATGGCAGGAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004424_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.238 A=0.000 C2=0.027
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.6=100)
A:
PF129322=Sec16=FE(44.1=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.6=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAACAGATCAGGAGGAGC
R:
GGAGCTTGGTGAACTTCTCCA
Band lengths:
254-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]