RnoEX6044924 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75185142-75187915:+
Coord C1 exon
chr13:75185142-75185203
Coord A exon
chr13:75187092-75187227
Coord C2 exon
chr13:75187685-75187915
Length
136 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGAATCGTCCCACAGGGA
3' ss Score
8.97
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTATACTTAATGATTTTGAGGATCAAGAGGAGATGAGAGCTTTCCCAGGGCCCCTCATCAG
Seq A exon
GGAGGACATACACAAGGTGGATATCATGACATTTTGTCAGAAGAAAGCAGCTCAGTGTCTCAAATCTGAGACGCCAGGGAGCAGGGACTCAGCTCTGCTTTGGCAACTGCTGGTTCTCCTTTGTCGACAGAATGGG
Seq C2 exon
TCCATGGTGGGGTCTGACATTGCCGAGCTGCTGATGCAAGACTGCAAGAAGCTGGAGAAGTACAAGAGGCAGCCCCCTGTAGCCAACCTCATCAACCTGACTGACGAGGACTGGCCGGTGCTGAGTTCTGGGACTCGCAACCTGCTCACTGGGGAGATTCCCCTCAACGTGGATACGCCTGCGCAGATCGTGGAGAAATTCACCAATCTGCTCTACTATGGAAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=FE(19.6=100)
A:
PF129322=Sec16=FE(44.1=100)
C2:
PF129322=Sec16=PD(0.1=0.0),PF129312=Sec16_C=PU(4.5=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCAAGAGGAGATGAGAGCT
R:
ATTTCTCCACGATCTGCGCAG
Band lengths:
242-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]