GgaEX0008584 @ galGal3
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
NA
Coordinates
chrE22C19W28_E50C23:74918-81632:-
Coord C1 exon
chrE22C19W28_E50C23:81504-81632
Coord A exon
chrE22C19W28_E50C23:79149-79240
Coord C2 exon
chrE22C19W28_E50C23:74918-75139
Length
92 bp
Sequences
Splice sites
3' ss Seq
TGTGACCTCCCTCATTGCAGATA
3' ss Score
10.73
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTATACATTCACTGGTATTTATACATTTGAATCACTTGTGAAAATTATTGCAAGAGGTTTCTGTATAGATGGCTTTACTTTCCTACGAGACCCATGGAACTGGCTAGATTTCAGTGTGATCATGATGGC
Seq A exon
ATATGTCACAGAGTTTGTGGACCTGGGGAATGTCTCAGCATTGAGAACTTTCAGAGTTCTCCGAGCTTTGAAAACTATCTCTGTAATTCCAG
Seq C2 exon
GCCTGAAGACCATTGTGGGTGCCCTGATCCAGTCAGTGAAGAAGCTGTCGGATGTGATGATCCTGACGGTGTTTTGCCTCAGTGTCTTTGCTCTGATTGGGCTGCAGCTGTTTATGGGCAATTTGAGGAACAAGTGTGTGATATGGCCAATTAATGTGAACGAGACGTACCTGGATAACGGCTCCCGGGGCTTTGACTGGGAGGAATACACCAACAATATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'5-7,'5-6,7-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.1=100)
A:
PF0052026=Ion_trans=FE(12.4=100)
C2:
PF0052026=Ion_trans=FE(29.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCCTACGAGACCCATGGA
R:
TAAACAGCTGCAGCCCAATCA
Band lengths:
167-259
Functional annotations
There are 1 annotated functions for this event
PMID: 15664175
Mutually exclusive exons 5A and 5N alter voltage-dependent gating and/or interactions with a blocking subunit. From Vuong et al, Nat Rev Neurosci 2016.