GgaEX0016761 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:23537746-23545515:-
Coord C1 exon
chr7:23545378-23545515
Coord A exon
chr7:23542237-23542542
Coord C2 exon
chr7:23537746-23537846
Length
306 bp
Sequences
Splice sites
3' ss Seq
AGTGTCTGGTTCTGTTTTAGGAA
3' ss Score
10.73
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
TGTTTCTCGAAACTCCTCCCCGCGGCGTCAGGTTTTCCTGAAGGAAGCTCTCGAGCAGAAGCTGGAGAAGGATCGGGAAGAGGAGTTGAGGAAAGCTGCTGTAGTCATCCGGGCCCACGTCTTGGGCTACATGGCAAG
Seq A exon
GAAGAAGTACCGAAAGGTGCTAGCCAGTGTTGTTACAATCCAAAAGAACTACCGAGCGTACTTCTGGAAGAAGAGCCTGCTGCGGCTGAAGGCCTCTGCCATCGTCCTGCAGAAGCACTGGCGTGGCCACCTGGCTCGCAGCCTCTACCGACGCCTGCGGCAGCAGGAGCTCCGGCGGCAGCAGGAAGCAGAGGAGAGGAGGAGGCGAGAGAAGGAAGAACAGATCAGAAGAGAGGAAGAGGAAAGACAATGGCAAGAAGAGAAAGAGCGTAGGAGGAAGCGGGAGGAGGAAGAGGTGAAGGAAAG
Seq C2 exon
AGAGAAGGAACAGCTGAATGCTCTGCTCCAGGTGGCTCCGGTAAGTTTAGCAGTTATTCTTTAGATACAGCTTCTCTGAGTGTCTGTGAAGGGTCCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172-'26-27,'26-26,27-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.155 C2=NA
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(4.1=10.6),PF0061222=IQ=PU(76.2=34.0)
A:
PF0061222=IQ=PD(19.0=3.9),PF0061222=IQ=WD(100=20.4)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCGAAACTCCTCCCCG
R:
AGGACCCTTCACAGACACTCA
Band lengths:
234-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]