GgaEX0016761 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEA4]
Coordinates
chr7:21451069-21458227:-
Coord C1 exon
chr7:21458121-21458227
Coord A exon
chr7:21454978-21455283
Coord C2 exon
chr7:21451069-21451108
Length
306 bp
Sequences
Splice sites
3' ss Seq
AGTGTCTGGTTCTGTTTTAGGAA
3' ss Score
10.73
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GTTTTCCTGAAGGAAGCTCTCGAGCAGAAGCTGGAGAAGGATCGGGAAGAGGAGTTGAGGAAAGCTGCTGTAGTCATCCGGGCCCACGTCTTGGGCTACATGGCAAG
Seq A exon
GAAGAAGTACCGAAAGGTGCTAGCCAGTGTTGTTACAATCCAAAAGAACTACCGAGCGTACTTCTGGAAGAAGAGCCTGCTGCGGCTGAAGGCCTCTGCCATCGTCCTGCAGAAGCACTGGCGTGGCCACCTGGCTCGCAGCCTCTACCGACGCCTGCGGCAGCAGGAGCTCCGGCGGCAGCAGGAAGCAGAGGAGAGGAGGAGGCGAGAGAAGGAAGAACAGATCAGAAGAGAGGAAGAGGAAAGACAATGGCAAGAAGAGAAAGAGCGTAGGAGGAAGCGGGAGGAGGAAGAGGTGAAGGAAAG
Seq C2 exon
AGAGAAGGAACAGCTGAATGCTCTGCTCCAGGTGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011172_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.204 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
A:
PF0061222=IQ=PD(19.0=3.9),PF0061222=IQ=WD(100=20.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]