GgaEX0023388 @ galGal3
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
NA
Coordinates
chr3:83608156-83609259:+
Coord C1 exon
chr3:83608156-83608285
Coord A exon
chr3:83608483-83608602
Coord C2 exon
chr3:83609113-83609259
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGGTTTCTTTGTTTTCAGTTG
3' ss Score
8.71
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACAACAGTTCCTGGCATAAGAAATAATGTCATACTACAACCACTGCAATCAGATACGCCGTATAAAATAACTGTTGTGGCTGTGTATGAAGACGGAGATGGTGGACAGTTGACTGGAAATGGAAGAACTG
Seq A exon
TTGGCCTGCTTCCTCCTCAGAATATATATATAACTGATGAATGGTATACACGATTCAGAGTTTCTTGGGATCCTTCACCATCCCCTGTTCTTGGCTATAAAATTGTATACAAGCCTGTGG
Seq C2 exon
GTTCAAATGAGCCCATGGAGGTTTTTGTGGGGGAAGTGACATCCTACACCTTGCATAATCTGTCTCCCAGTACTACTTATGATGTGAATGTTTATGCCCAGTACGACTCCGGAATGAGCATACCTTTGACAGATCAAGGCACTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'45-49,'45-47,46-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(44.6=84.1)
A:
PF0004116=fn3=PU(46.8=90.2)
C2:
PF0004116=fn3=PD(51.9=82.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGTTCCTGGCATAAGA
R:
TGCTCATTCCGGAGTCGTACT
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]