DreEX6056255 @ danRer10
Exon Skipping
Gene
ENSDARG00000078322 | col12a1a
Description
collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
Coordinates
chr17:49750074-49754620:-
Coord C1 exon
chr17:49754491-49754620
Coord A exon
chr17:49751896-49752015
Coord C2 exon
chr17:49750074-49750220
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGATGTGGTGTCTCCTTTAGTGG
3' ss Score
7.81
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ACAACTGTCCCAGGCAACCGTAACTCGGTCATCCTGCAAAACCTGCAGCCAGACACGCCGTACAACATCAACGTAGAAGCCATTTATCAAGATGGCCCTGGAGGACGACTCAGTGGAGATGGAAAAACAT
Seq A exon
TGGATCTCCTTGGGCCTCGTAACCTGCGTGTTTCAGACGAGTGGTACACACGTTTCCGAGTGTCCTGGGATCCTGCAGCCGCACGGGTGAATGGATATAAACTGGTCTATACACCAGTGG
Seq C2 exon
GCACAACCGACACCATGGAAGCCTTCGTTGGAGACGTGACTTCACACCACCTGAACAACCTCCAGCCTGGCACCACATACGACCTGAAGGTTTACGCTCAGTATGATGCGGGCTTGAGCGGCGCTCTGGTCGGACAGGGAACCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078322-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(44.6=84.1)
A:
PF0004116=fn3=PU(46.8=90.2)
C2:
PF0004116=fn3=PD(51.9=82.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTCCCAGGCAACCGTAA
R:
CAAGCCCGCATCATACTGAGC
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]