GgaEX0023388 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80272175-80273278:+
Coord C1 exon
chr3:80272175-80272304
Coord A exon
chr3:80272502-80272621
Coord C2 exon
chr3:80273132-80273278
Length
120 bp
Sequences
Splice sites
3' ss Seq
AATGGTTTCTTTGTTTTCAGTTG
3' ss Score
8.71
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACAACAGTTCCTGGCATAAGAAATAATGTCATACTACAACCACTGCAATCAGATACGCCGTATAAAATAACTGTTGTGGCTGTGTATGAAGACGGAGATGGTGGACAGTTGACTGGAAATGGAAGAACTG
Seq A exon
TTGGCCTGCTTCCTCCTCAGAATATATATATAACTGATGAATGGTATACACGATTCAGAGTTTCTTGGGATCCTTCACCATCCCCTGTTCTTGGCTATAAAATTGTATACAAGCCTGTGG
Seq C2 exon
GTTCAAATGAGCCCATGGAGGTTTTTGTGGGGGAAGTGACATCCTACACCTTGCATAATCTGTCTCCCAGTACTACTTATGATGTGAATGTTTATGCCCAGTACGACTCCGGAATGAGCATACCTTTGACAGATCAAGGCACTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'60-53,'60-52,61-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(44.6=84.1)
A:
PF0004116=fn3=PU(46.8=90.2)
C2:
PF0004116=fn3=PD(51.9=82.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAGTTCCTGGCATAAGA
R:
TGCTCATTCCGGAGTCGTACT
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]