BtaEX6048034 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14911956-14915775:-
Coord C1 exon
chr9:14915646-14915775
Coord A exon
chr9:14913177-14913296
Coord C2 exon
chr9:14911956-14912111
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGCCAATATTTGTTTTCAGTGG
3' ss Score
6.22
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACCACCGTCCCAGGCAGAAGAAACAACGTAATTCTCCAGCCCCTGCAGCCTGATACTCCGTATAAAATTACTGTTATTCCTGTTTATGAAGATGGAGATGGTACCCATTTGACTGGAAATGGAAGAACTG
Seq A exon
TGGGATTACTTCCTCCTCAGAACATACACATCTCTGATGAATGGTATACCAGATTCAGGGTGTCCTGGGATCCTTCACCCTCTCCTGTTCTTGGATATAAAATTGTGTATAAGCCAGTGG
Seq C2 exon
TAATAAAAGGTTCCAATGAGCCCATGGAAGTTTTTGTTGGAGAAGTGACATCATACACATTACACAATCTGAACCCCAGCACCACCTATGATGTGAATGTCTACGCTCAGTATGATTCTGGACTCAGTGTTCCTCTGACCGACCAAGGCACTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'38-43,'38-41,39-43=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.2=79.5)
A:
PF0004116=fn3=PU(45.1=90.2)
C2:
PF0004116=fn3=PD(53.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTCTCCAGCCCCTGCAG
R:
TTGGTCGGTCAGAGGAACACT
Band lengths:
249-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]