RnoEX0022810 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87081632-87085981:-
Coord C1 exon
chr8:87085852-87085981
Coord A exon
chr8:87084058-87084177
Coord C2 exon
chr8:87081632-87081778
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTACCCATGTTTCCTTGCAGTGG
3' ss Score
8.22
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
ACCACAGTTCCAGGCAGGAGAAACAATGTAATACTGCAGCCCCTGCAACCTGACACTCCATATAAAATTACTGTCATTGCCATTTATGAGGATGGAGATGGTGGCCATCTAACTGGAAACGGGAGGACTG
Seq A exon
TGGGTCTGCTTCCGCCTCAGAACATGCACATCTCTGACGAATGGTACACAAGGTTCCGAGTGTCCTGGGACCCTTCACCCTCACCAGTCCTTGGATATAAAATTGTGTACAAGCCAGTGG
Seq C2 exon
GTTCCAATGAGCCCATGGAAGCCTTTGTTGGAGAAGTGACGTCATACACTTTACACAACCTCAATCCCAGCACTACCTATGATGTCAGTGTTTATGCACAGTATGACTCTGGACTCAGCGTTCCCCTCACAGATCAAGGCACCACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'55-63,'55-61,57-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(44.6=84.1)
A:
PF0004116=fn3=PU(46.8=90.2)
C2:
PF0004116=fn3=PD(51.9=82.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGTAATACTGCAGCCCCTG
R:
CTTGATCTGTGAGGGGAACGC
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]