GgaEX1000790 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5692842-5695112:+
Coord C1 exon
chr23:5692842-5693008
Coord A exon
chr23:5694221-5694380
Coord C2 exon
chr23:5694786-5695112
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCGTTGCATCCCAATTACAGGCA
3' ss Score
7.25
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTGCTGCAGCGACTCCTGGACGATCGCAAAGCCACCGTTGAGATGATCCAGGCGGAGGGTGGGCGCATCGCACAGTCAGCTGAGCCCGCAGACCGGGAGAAGATCACCGGGCAGCTGCAGAGCCTGGAGAGCCGCTGGGCAGCGCTGCTGTGCCGGGCGGCGGGCAG
Seq A exon
GCAGAAGCAGCTGGAGGACATCCTGGTGCTGGCAAAGCAGTTCCATGAGACCACAGAGCCTGTGTCAGACTGGCTGTCTGTGACGGAGAAGAAGTTGGCCAACTCGGAGCCCATCGGCACACAGACTGCCAAGATCCAGCAGCAGATCAGCCGGCACAAG
Seq C2 exon
GCTCTAGAGGAGGACATTGAGGGCCACGCGGCCGACGTGGCCCACGCGGTGCGTGTCGGGCAGGCGCTGTCCGCCCTGAGCTGCGCCGCCGAGCAGCGGCTGCTGGCAGAGAAGTTGGAGTCTCTGCAGGGCCGTTACGGGGAGGTCCGCGAGCGGTGCTGCCGGAAGGCGGCTCTGCTGGAGCAGGCCCTGTGTAACGCCCGGCTCTTTGGGGAGGAGGAGGTGGAAGTGCTCAACTGGCTGGCTGAGGTCGAGGACAAGCTCGGCTCGGTATCCGTAAAGGATTACAAACGGGACGTCCTGCAGAAGCAGCATGCTGACCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'68-69,'68-68,69-69=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.093 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(51.4=100)
A:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
C2:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGTTGAGATGATCCAGGC
R:
CTCCAACTTCTCTGCCAGCAG
Band lengths:
255-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]