RnoEX0051755 @ rn6
Exon Skipping
Gene
ENSRNOG00000016047 | Macf1
Description
microtubule-actin crosslinking factor 1 [Source:RGD Symbol;Acc:1306057]
Coordinates
chr5:141086342-141088932:-
Coord C1 exon
chr5:141088766-141088932
Coord A exon
chr5:141086981-141087140
Coord C2 exon
chr5:141086342-141086668
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTGTGTTTGTGTAGGCA
3' ss Score
9.02
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
TTGCTCCAGCGACTCCTAGATGATCGCAAGGCCACAGTGGATATGCTTCAAGCAGAAGGAGGCAGAATAGCCCAGGCTGCTGAACTGGCTGATAGAGAGAAAATCACTGGGCAGCTGGAAAGCCTTGAATGTAGATGGACTGAGCTCCTCAGCAAGGCAGCAGCCAG
Seq A exon
GCAAAAGCAGCTGGAGGATATCTTGGTTCTGGCTAAACAATTCCACGAGACAGCTGAGCCTATTTCTGACTTCCTATCTGTCACAGAGAAAAAGCTTGCTAACTCGGAACCTGTTGGCACTCAAACTGCCAAAATACACCAGCAGATTATTCGTCACAAG
Seq C2 exon
GCTCTAGAGGAAGAAATAGAAAACCATGCAGCAGATGTGCAGCAGGCAGTTAAAATCGGGCAGTCCCTCTCCTCCCTGATATGTCCAGCAGAACAGGGCATCATGTCAGAAAAGCTAGACTCATTGCAGGCCCGATACAGTGAAATTCAAGACCGGTGCTGTCGGAAAGCATCCCTGCTTGAGCAGGCGCTGTTCAATGCTAGACTGTTCGGGGAGGATGAGGTGGAGGTGCTCAATTGGCTGGCTGAGGTTGAGGACAAGCTCAGTGCAGTGTTCGTAAAGGATTACAGACAGGATGTCCTGCAGAAACAGCATGCCGACCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016047-'92-101,'92-100,93-101
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.093 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(51.4=100)
A:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
C2:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTGAACTGGCTGATAG
R:
CGACAGCACCGGTCTTGAATT
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]