GgaEX1000790 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5375495-5377765:+
Coord C1 exon
chr23:5375495-5375661
Coord A exon
chr23:5376874-5377033
Coord C2 exon
chr23:5377439-5377765
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCGTTGCATCCCAATTACAGGCA
3' ss Score
7.25
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTGCTGCAGCGACTCCTGGACGATCGCAAAGCCACCGTTGAGATGATCCAGGCGGAGGGTGGGCGCATCGCACAGTCAGCTGAGCCCGCAGACCGGGAGAAGATCACCGGGCAGCTGCAGAGCCTGGAGAGCCGCTGGGCAGCGCTGCTGTGCCGGGCGGCGGGCAG
Seq A exon
GCAGAAGCAGCTGGAGGACATCCTGGTGCTGGCAAAGCAGTTCCATGAGACCACAGAGCCTGTGTCAGACTGGCTGTCTGTGACGGAGAAGAAGTTGGCCAACTCGGAGCCCATCGGCACACAGACTGCCAAGATCCAGCAGCAGATCAGCCGGCACAAG
Seq C2 exon
GCTCTAGAGGAGGACATTGAGGGCCACGCGGCCGACGTGGCCCACGCGGTGCGTGTCGGGCAGGCGCTGTCCGCCCTGAGCTGCGCCGCCGAGCAGCGGCTGCTGGCAGAGAAGTTGGAGTCTCTGCAGGGCCGTTACGGGGAGGTCCGCGAGCGGTGCTGCCGGAAGGCGGCTCTGCTGGAGCAGGCCCTGTGTAACGCCCGGCTCTTTGGGGAGGAGGAGGTGGAAGTGCTCAACTGGCTGGCTGAGGTCGAGGACAAGCTCGGCTCGGTATCCGTAAAGGATTACAAACGGGACGTCCTGCAGAAGCAGCATGCTGACCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'93-104,'93-102,94-104
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.304 A=0.093 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(51.4=100)
A:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
C2:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGTTGAGATGATCCAGGC
R:
CTCCAACTTCTCTGCCAGCAG
Band lengths:
255-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]