GgaEX1000791 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5694786-5696908:+
Coord C1 exon
chr23:5694786-5695112
Coord A exon
chr23:5695734-5695818
Coord C2 exon
chr23:5696667-5696908
Length
85 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGGCTTTCTGTCCAGGCT
3' ss Score
5.27
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCTCTAGAGGAGGACATTGAGGGCCACGCGGCCGACGTGGCCCACGCGGTGCGTGTCGGGCAGGCGCTGTCCGCCCTGAGCTGCGCCGCCGAGCAGCGGCTGCTGGCAGAGAAGTTGGAGTCTCTGCAGGGCCGTTACGGGGAGGTCCGCGAGCGGTGCTGCCGGAAGGCGGCTCTGCTGGAGCAGGCCCTGTGTAACGCCCGGCTCTTTGGGGAGGAGGAGGTGGAAGTGCTCAACTGGCTGGCTGAGGTCGAGGACAAGCTCGGCTCGGTATCCGTAAAGGATTACAAACGGGACGTCCTGCAGAAGCAGCATGCTGACCAGCTG
Seq A exon
GCTCTGAACGAGGAAATTGTGAACAGGAAGAAGAATGTGGATCAAGCCATCAGAAATGGGCAGGCTCTCCTGAAGCAAACCACAG
Seq C2 exon
GGGAGGAGGTGCTGCTCATCCAGGAGAAGCTGGATGGGATTAAGACCCGCTACTCGGACATCACTGCCGCCAGCTCCAAGGCGCTGCGCACACTGGAGCAGGCTCGCCAGCTGGCCACCAAGTTCCAGTCCACGCATGAGGAGCTCAATGCCTGGATGAGCAAAGTGGAGGATGAGCTGGCGTCCAGTGGGGGACAGTCCCCAGCCAGCGAGCAGATACCCCAGTTCCAGCAGAGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'70-71,'70-70,71-71=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
A:
PF0043516=Spectrin=FE(26.4=100)
C2:
PF0043516=Spectrin=PD(31.1=40.7),PF0043516=Spectrin=PU(41.1=54.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTGGGGAGGAGGAGGTG
R:
AGCGGGTCTTAATCCCATCCA
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]