GgaEX1000791 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5377439-5379561:+
Coord C1 exon
chr23:5377439-5377765
Coord A exon
chr23:5378387-5378471
Coord C2 exon
chr23:5379320-5379561
Length
85 bp
Sequences
Splice sites
3' ss Seq
CAGTTTGGCTTTCTGTCCAGGCT
3' ss Score
5.27
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCTCTAGAGGAGGACATTGAGGGCCACGCGGCCGACGTGGCCCACGCGGTGCGTGTCGGGCAGGCGCTGTCCGCCCTGAGCTGCGCCGCCGAGCAGCGGCTGCTGGCAGAGAAGTTGGAGTCTCTGCAGGGCCGTTACGGGGAGGTCCGCGAGCGGTGCTGCCGGAAGGCGGCTCTGCTGGAGCAGGCCCTGTGTAACGCCCGGCTCTTTGGGGAGGAGGAGGTGGAAGTGCTCAACTGGCTGGCTGAGGTCGAGGACAAGCTCGGCTCGGTATCCGTAAAGGATTACAAACGGGACGTCCTGCAGAAGCAGCATGCTGACCAGCTG
Seq A exon
GCTCTGAACGAGGAAATTGTGAACAGGAAGAAGAATGTGGATCAAGCCATCAGAAATGGGCAGGCTCTCCTGAAGCAAACCACAG
Seq C2 exon
GGGAGGAGGTGCTGCTCATCCAGGAGAAGCTGGATGGGATTAAGACCCGCTACTCGGACATCACTGCCGCCAGCTCCAAGGCGCTGCGCACACTGGAGCAGGCTCGCCAGCTGGCCACCAAGTTCCAGTCCACGCATGAGGAGCTCAATGCCTGGATGAGCAAAGTGGAGGATGAGCTGGCGTCCAGTGGGGGACAGTCCCCAGCCAGCGAGCAGATACCCCAGTTCCAGCAGAGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'96-108,'96-106,97-108
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
A:
PF0043516=Spectrin=FE(26.4=100)
C2:
PF0043516=Spectrin=PD(31.1=40.7),PF0043516=Spectrin=PU(41.1=54.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTGGGGAGGAGGAGGTG
R:
AGCGGGTCTTAATCCCATCCA
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]