GgaEX1016345 @ galGal3
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
NA
Coordinates
chr6:12103137-12108174:+
Coord C1 exon
chr6:12103137-12103187
Coord A exon
chr6:12106645-12106680
Coord C2 exon
chr6:12108148-12108174
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTCATCCTTTCCAGGGA
3' ss Score
10.63
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGTGCTCCAGGAGAAGCAGGCATGTCTATCATTGGGCCCCGTGGTCCACCC
Seq A exon
GGACAGCCTGGAACAAGAGGTTTTCCTGGATTCCCG
Seq C2 exon
GGTCCTATTGGCTTGGATGGCAAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.5=47.1),PF0139113=Collagen=PU(11.5=41.2)
A:
PF0139113=Collagen=FE(18.0=100)
C2:
PF0139113=Collagen=FE(13.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTCCAGGAGAAGCAGG
R:
GCCATCCAAGCCAATAGGACC
Band lengths:
72-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]