GgaEX1016345 @ galGal4
Exon Skipping
Gene
ENSGALG00000004286 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]
Coordinates
chr6:10586997-10596865:+
Coord C1 exon
chr6:10586997-10587032
Coord A exon
chr6:10593716-10593751
Coord C2 exon
chr6:10596839-10596865
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTTCATCCTTTCCAGGGA
3' ss Score
10.63
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGAGACAAAGGCGCAATGGGGATTCCTGGGCGGCCG
Seq A exon
GGACAGCCTGGAACAAGAGGTTTTCCTGGATTCCCG
Seq C2 exon
GGTGCCGCAGGTCCCAGGGGACTACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004286_MULTIEX2-3/5=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(23.9=100)
A:
PF0139113=Collagen=FE(18.3=100)
C2:
PF0139113=Collagen=FE(13.3=100)
Main Skipping Isoform:
ENSGALT00000006816fB6332
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]