HsaEX6088757 @ hg19
Exon Skipping
Gene
ENSG00000197467 | COL13A1
Description
collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]
Coordinates
chr10:71640259-71648086:+
Coord C1 exon
chr10:71640259-71640309
Coord A exon
chr10:71647212-71647247
Coord C2 exon
chr10:71648060-71648086
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTTGTTTTTTTTTTTTCAGGGT
3' ss Score
11.99
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGGTCCCCCGGAGACGCTGGGCTGTCCATCATTGGTCCCCGCGGCCCCCCT
Seq A exon
GGTCAACCAGGAACTAGAGGTTTCCCTGGATTTCCG
Seq C2 exon
GGTCCCATTGGGCTGGACGGCAAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197467-'9-11,'9-10,10-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(17.4=47.1),PF0139113=Collagen=PU(9.8=35.3)
A:
PF0139113=Collagen=FE(25.0=100),PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=PD(15.9=77.8),PF0139113=Collagen=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
ENSP00000346553, ENSP00000348695, ENSP00000350463, ENSP00000381936, ENSP00000381938, ENSP00000381940, ENSP00000381941, ENSP00000381943, ENSP00000381944, ENSP00000381945, ENSP00000381946, ENSP00000381949, ENSP00000381949f9775A, ENSP00000428057, ENSP00000428342, ENSP00000430061, ENSP00000430089, ENSP00000430173
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTGGGCTGTCCATCAT
R:
GTTTGCCGTCCAGCCCAAT
Band lengths:
64-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)