MmuEX0012149 @ mm9
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61359094-61365888:-
Coord C1 exon
chr10:61365838-61365888
Coord A exon
chr10:61359887-61359922
Coord C2 exon
chr10:61359094-61359120
Length
36 bp
Sequences
Splice sites
3' ss Seq
CAATGCTCTGTTCTTTTCAGGGC
3' ss Score
10.03
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGTGCCCCTGGAGATGCGGGGATGTCCATCGTCGGGCCTCGAGGCCCCCCT
Seq A exon
GGCCAGCCTGGTACCCGAGGTTTCCCTGGATTCCCG
Seq C2 exon
GGTCCCATTGGTCTTGACGGCAGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(18.2=47.1),PF0139113=Collagen=PU(11.3=41.2)
A:
PF0139113=Collagen=FE(18.0=100)
C2:
PF0139113=Collagen=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCCCTGGAGATGCG
R:
GCCGTCAAGACCAATGGGAC
Band lengths:
72-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: