GgaEX1016988 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9339350-9339721:+
Coord C1 exon
chr12:9339350-9339412
Coord A exon
chr12:9339498-9339533
Coord C2 exon
chr12:9339641-9339721
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGATCGTGTGTCCATCACAGGGC
3' ss Score
8.13
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGATTGCCTGGTCCCCAGGGCAGCATGGGGCTGCCTGGCCCCCCAGGACCCCCTGGTCTGGTG
Seq A exon
GGCCCACCGGGTGCACCTGGGCTGCCAGGACAAGTG
Seq C2 exon
GGGGAGAGTGGCAAACCAGGTGTGCCTGGGCGGGATGGTGTGCCGGGGAAGGACGGCGAACCAGGGATGCCTGGGAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'73-78,'73-77,74-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.3=100)
A:
PF0139113=Collagen=FE(13.9=100)
C2:
PF0139113=Collagen=PD(31.6=92.6),PF0139113=Collagen=PU(35.9=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCAGGGCAGCATGG
R:
CATCCCTGGTTCGCCGTC
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]