DreEX0023514 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40215963-40218872:-
Coord C1 exon
chr6:40218810-40218872
Coord A exon
chr6:40218408-40218443
Coord C2 exon
chr6:40215963-40216043
Length
36 bp
Sequences
Splice sites
3' ss Seq
GCGTTTTTTAATGTTTGCAGGGA
3' ss Score
7.87
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GGCCCTCCTGGACCTCAGGGCAACAGAGGTTTACCTGGACCTGCAGGCACTCCAGGAGCCATA
Seq A exon
GGACCACAAGGACCTCAAGGGCTTCCAGGACAAGTG
Seq C2 exon
GGAGAGGGGGGCAAGCCTGGGGTCCCAGGAAGAGACGGTGCTCCGGGTAAAGATGGCCTGCCAGGCTTAAATGGTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.6=100)
A:
PF0139113=Collagen=FE(14.1=100),PF0139113=Collagen=PU(13.8=91.7)
C2:
PF0139113=Collagen=PD(34.5=74.1),PF0139113=Collagen=PU(27.9=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGCAACAGAGGTTTACC
R:
CTGGCAGGCCATCTTTACCC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]