MmuEX6069077 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108877074-108877451:+
Coord C1 exon
chr9:108877074-108877136
Coord A exon
chr9:108877255-108877290
Coord C2 exon
chr9:108877371-108877451
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATCTGCTCCCCACTCCCCAGGGT
3' ss Score
8.37
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGTCTGCCTGGACCTGTTGGAGCTGTGGGACTCCCTGGCCCTCCTGGCCCTTCCGGCCTCGTG
Seq A exon
GGTCCACAAGGCTCTCCAGGTTTGCCCGGACAAGTG
Seq C2 exon
GGGGAGACAGGGAAGCCAGGACCTCCAGGCCGTGACGGTAGCAGTGGAAAGGACGGAGATCGGGGAAGTCCTGGTGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'88-92,'88-91,89-92=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(27.8=100)
A:
PF0139113=Collagen=FE(15.3=100)
C2:
PF0139113=Collagen=PD(33.3=88.9),PF0139113=Collagen=PU(33.8=85.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCTGGACCTGTTGGAG
R:
CCTTTCCACTGCTACCGTCAC
Band lengths:
113-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: