GgaEX1016999 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9342171-9342490:+
Coord C1 exon
chr12:9342171-9342230
Coord A exon
chr12:9342340-9342384
Coord C2 exon
chr12:9342455-9342490
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACCTCCCCTTCTGCTTGCAGGGT
3' ss Score
11.38
5' ss Seq
ATGGTACGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGTGACCCAGGGGCTGGGCTGCCAGGAGCCAGAGGTGAACGTGGAGACCCAGGACCACGG
Seq A exon
GGTGAAGATGGGCGCCCAGGGCTGGCAGGTGACCGCGGGCCAATG
Seq C2 exon
GGCTTGCCTGGGAACCGAGGAGAGCGTGGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'86-91,'86-90,87-91=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(11.9=35.0),PF0139113=Collagen=PU(25.4=75.0)
A:
PF0139113=Collagen=PU(23.3=93.3)
C2:
PF0139113=Collagen=FE(18.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAGCCAGAGGTGAA
R:
CTTGTCCCCACGCTCTCCTC
Band lengths:
76-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]