MmuEX6069066 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108977953-108978385:+
Coord C1 exon
chr9:108977953-108978012
Coord A exon
chr9:108978118-108978162
Coord C2 exon
chr9:108978350-108978385
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAATGTCATCCATCATTCAGGGT
3' ss Score
6.28
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GGAGACCCGGGAGCAGGACTGCCGGGGCCCCGAGGTGAGCGTGGTGAGCCAGGTGTCCGG
Seq A exon
GGTGAAGATGGCCACCCTGGCCAGGAAGGACCTCGTGGACTTGTG
Seq C2 exon
GGGCCCCCTGGCAGCCGGGGAGAGCAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'110-126,'110-122,113-126=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.3=25.0),PF0139113=Collagen=PU(25.0=75.0)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCGGGAGCAGGAC
R:
CTTCTCTCCTTGCTCTCCCCG
Band lengths:
95-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types