RnoEX6037741 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117719913-117720344:+
Coord C1 exon
chr8:117719913-117719972
Coord A exon
chr8:117720077-117720121
Coord C2 exon
chr8:117720309-117720344
Length
45 bp
Sequences
Splice sites
3' ss Seq
GACCTAATGTCATCATTCAGGGT
3' ss Score
7.03
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GGAGACTCAGGAGCAGGGCTGCCAGGGCCCCGAGGCGAGCGTGGTGAACCAGGTCTCCGG
Seq A exon
GGTGAAGATGGCCACCCTGGCCAGGAAGGACCTCGTGGACTCATG
Seq C2 exon
GGGCCCCCTGGCAGCCGGGGAGAGCGAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'106-101,'106-100,107-101=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.3=25.0),PF0139113=Collagen=PU(25.0=75.0)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTCAGGAGCAGGGCTG
R:
CTTCTCTCCTCGCTCTCCCC
Band lengths:
95-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]