BtaEX6095639 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51883736-51884225:+
Coord C1 exon
chr22:51883736-51883795
Coord A exon
chr22:51883918-51883962
Coord C2 exon
chr22:51884190-51884225
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATCTAATGTCACCATGCAGGGT
3' ss Score
5.99
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTGACACTGGAGCAGGGCTGCCTGGGGCCCGAGGCGAGCGTGGGGAGCCCGGTGTCCGG
Seq A exon
GGTGAAGATGGCCGCCCCGGCCTGGAGGGACCCCGAGGACTTGCG
Seq C2 exon
GGTCCCCCAGGCATCCGGGGAGAACGTGGGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'100-105,'100-104,101-105=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.3=25.0),PF0139113=Collagen=PU(25.0=75.0)
A:
PF0139113=Collagen=FE(23.3=100)
C2:
PF0139113=Collagen=FE(18.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACTGGAGCAGGGCTG
R:
CTTCTCCCCACGTTCTCCCC
Band lengths:
94-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]