GgaEX1050978 @ galGal3
Exon Skipping
Gene
ENSGALG00000015850 | SFRS15
Description
NA
Coordinates
chr1:108141779-108143794:-
Coord C1 exon
chr1:108143686-108143794
Coord A exon
chr1:108143131-108143298
Coord C2 exon
chr1:108141779-108141864
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTGTTCTTCTAAGGTC
3' ss Score
8.87
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGGATTTGCAGGAGAAGGTATACAACAGCCAGTATTTCCTCAGCTCCCAAATATGGATCCTTTTCAACAACGAATGATGGGAATGCAACAGGATCCAATGCGCCATCAG
Seq A exon
GTCCCACTTCCTCCTAATGGACAAATGCCAGGTTTTGGTCTCCTTCCTACCCCTCAGTTTCCACCCATGGCTCAGCCTGTGATTCCACCAACAGCTCCTGTGCAGCAAACTTTTCAGACTCCTTTCCCAGTGCAGAGTGAATCACACATGCAAAAAACACATCAGCAG
Seq C2 exon
AACATGGAAGTGGAACAGCCACCTATTCAAGAAAGAAAACGACATGTTTCTGACAACAGAAAGTCAAGATCTAGATCTGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015850-'13-18,'13-15,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTTGCAGGAGAAGGTATACA
R:
TTGATGCAGATCTAGATCTTGACT
Band lengths:
194-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]