DmeEX6012463 @ dm6

Exon Skipping

Gene

Description

This gene is referred to in FlyBase by the symbol DmelCG4266 (FBgn0034598). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is 2R:21161713..21168659. Its molecular function is described by: mRNA binding; nucleic acid binding. The biological processes in which it is involved are not known. 13 alleles are reported. The phenotypes of these alleles manifest in: chaeta; mesothoracic tergum. The phenotypic classes of alleles include: viable; visible; body color defective; partially lethal - majority die; some die during pupal stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.

Coordinates

chr2R:21165559-21167042:-

Coord C1 exon

chr2R:21166890-21167042

Coord A exon

chr2R:21166730-21166834

Coord C2 exon

chr2R:21165559-21165874

Length

105 bp

Sequences

Splice sites

3' ss Seq

TCATTATGATTTGCTTTCAGGGA

3' ss Score

9.02

5' ss Seq

GAGGTATAC

5' ss Score

6.64

Exon sequences

Seq C1 exon

GAGAAGAAGATCAAGCAGCTGCTAAACAATCCGAATGTGCTGCGGCAGCTCCATACGCTGCAGAACTTCCAAAATTTGAAGCCGCAGGAGGAGAACCAGAAGCATCGCTATCAGGACGAGGCACTGCAGCAGCATTTCCAGAACGTAATGAAG

Seq A exon

GGAAATGCTGGTATGCCGCCGGGCATGGGCATGGGCATGAACATGAACGACAGCATGGACCTTAACAAGGATGTCGAGTTCATATCGGAGCAACAGACCATAGAG

Seq C2 exon

GTGATCAATCTGGATGGTGGCGATTCCCGCAGCCCGACGCCCGACCGTGATCGCTACAAGCGCAGTCGCCGGAACAGTCGCAGCCGGACGAGATCTCCGCGAGGACGTGGCGCCGGAGGAGGCACGGGCAACGATCGACGTCGGCGTGGCACTCGTTCCCGATCGCGCAGCCGATCACCACGGTCCAGCCGGCGACGCGGATCAAGGGACCGGGATCGCATGGATCGTAGCAATCGAGACAAGGAACGCGATCGGGAACACGAGCGTGAGCGGCGCAAGAAGGGATTGCCCGACATCAAAAAGGAGCATCTCAGTG

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0034598-'5-4,'5-3,6-4=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features