HsaEX6050109 @ hg38
Exon Skipping
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154805369-154808798:+
Coord C1 exon
chr6:154805369-154805486
Coord A exon
chr6:154808070-154808201
Coord C2 exon
chr6:154808686-154808798
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTGTATATGTTCTCAATAGGCC
3' ss Score
8.39
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCTCACGTTTCAGAATCTGTGAACAATTCCATTTTTCATCAGATAGCAGAACAACTACAACAGCAAAACCTAGAACATCTCAGACAGCAGCTCTTGGAGCAGCAACAGCCTCAAAAG
Seq A exon
GCCACTCCTCAGGATAGTCAGGAAGGAACCTTTGGGTCAGAGCATTCAGCGTCACCATCACAAGGGAGTAGTCAGCAGCATTTTCTTGAACCTGAAGTCAATTTGGATGATTCCATAGATATTCAGCAACAG
Seq C2 exon
GATATGGATATAGATGAAGGGCAAGATGGAGTGGAAGAGGAGGTCTTTGAACAAGAAGCTAAGAAAGTGGCGGTTCGCTCAAGATCAAGAACACATTCACGATCTCGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'32-39,'32-37,34-39
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064956=Transformer=PU(19.7=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACGTTTCAGAATCTGTGAACA
R:
CGAGATCGTGAATGTGTTCTTGA
Band lengths:
224-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains