DreEX0064318 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48851268-48854024:+
Coord C1 exon
chr17:48851268-48851388
Coord A exon
chr17:48853649-48853780
Coord C2 exon
chr17:48853915-48854024
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGCACCATTTATTTGGACAGTCT
3' ss Score
4.21
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACCTGTGCTGTCAGATTCCATCAACAGCTCAATATTTCATCAGCTGGCGGAGCATCTTCAGCAGCAAAACCTCGAGCAGTTTCAGAAACAGCTAATGGAGCACCAACAGCATCAACAGAAG
Seq A exon
TCTATGAGCATGGAGAGCCAGGACGCTATTTTTGGCACTGAAAATTCTGCCCCATCTGGCCAGAGCAGCGCCCCGTCACAGCACCAAGTTCAAGAATCAAAAATGGATGATTCCATGGACAACCAACAACAG
Seq C2 exon
GACATGGATATTGATGAGGGACAGGATGTGGTCGATGAGGAGCTCTTTGAGACGGATGAGAAGAAAACCAGCAGCACCCGTTCAAGGACGCGCTCAAGATCCCGCTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'7-11,'7-9,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF064956=Transformer=PU(5.0=15.9)
C2:
PF064956=Transformer=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGCTGTCAGATTCCAT
R:
CTAGAGCGGGATCTTGAGCGC
Band lengths:
231-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]