BtaEX6050100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92847696-92853909:+
Coord C1 exon
chr9:92847696-92847813
Coord A exon
chr9:92853408-92853539
Coord C2 exon
chr9:92853797-92853909
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTACATACTCAACAGGCA
3' ss Score
6.66
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TTCTCATGTTTCGGAATCTGTGAACAATTCCATCTTTCATCAGATAGCAGAACAATTGCAGCAGCAAAACCTTGAACATCTCAGACAGCAACTCCTGGAACAGCAGCAGCCTCAAAAG
Seq A exon
GCAACTCCTCAGGATAGTCAAGAAGGAACATTTGGGTCAGAACATTCTGCATCACCGTCACAAGGGAGCAGTCAGCAGCATTTCCTTGAACCTGAAGCAAATTTGGATGATTCTATAGATATTCAGCAACAG
Seq C2 exon
GATATGGATATAGATGAAGTGCAAGATGCAGTGGAAGAGGAGATCTTTGAACAGGAAGCAAAGAAAGTGGCTGTTCGTTCAAGATCAAGAACACACTCCCGATCTCGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'15-13,'15-12,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF100254=DUF2267=FE(27.9=100)
A:
PF100254=DUF2267=FE(30.7=100)
C2:
PF100254=DUF2267=PD(17.9=65.8),PF086487=DUF1777=PU(14.6=36.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATGTTTCGGAATCTGTGAACA
R:
TGAACGAGATCGGGAGTGTGT
Band lengths:
228-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]