RnoEX0078262 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44068956-44076532:+
Coord C1 exon
chr1:44068956-44069073
Coord A exon
chr1:44075887-44076018
Coord C2 exon
chr1:44076420-44076532
Length
132 bp
Sequences
Splice sites
3' ss Seq
CATTTGTTTGTTCTCAACAGGTA
3' ss Score
11.09
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTCTCACGTTTCTGAGTCTGTGAACAACTCCATCTTCCATCAGATAGCAGAACAGCTGCAGCAGCAGAACCTGGAGCAGTTGCGGCAGCAGCTCCTGGAGCAGCAGCAGCCTCAGAAG
Seq A exon
GTAACTCCTCAGGACAGCCAGGAGGGAGCATTTGGCTCTGAGCACTCAGCTTCACCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAATTTAGATGATTCCATAGACATTCAGCAACAG
Seq C2 exon
GATATGGATATTGATGAAGGGCAAGATGTTGTTGAAGAGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATTCACGATCTCGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'19-17,'19-16,20-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086487=DUF1777=PU(14.7=36.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACGTTTCTGAGTCTGTGA
R:
TCGAGATCGTGAATGAGTTCTTGA
Band lengths:
226-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]