GgaEX1050991 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52242609-52245575:+
Coord C1 exon
chr3:52242609-52242726
Coord A exon
chr3:52245173-52245304
Coord C2 exon
chr3:52245463-52245575
Length
132 bp
Sequences
Splice sites
3' ss Seq
TATAATTATCTGCTATTTAGGCA
3' ss Score
6.15
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCTTTAGTACCAGAATCTGTGAACAACTCACTTTTTCACCAACTAGCTGAACAACTGCAGCAACAAAATTTAGAACATCTCAGACAACAACTTCTGGAGCAACAGCAGCCTCAAAAG
Seq A exon
GCAAGCCCTGAGGAAAATCAGGAAGGGAATTTTGGTTCAGAGCACTCTGCATCACCATCACAAGGGAGCAGTCAACAGCAGTTTTTAGAAGCAGAAACAAATGTAGATGATTCAATGGATATTCAACAACAG
Seq C2 exon
GATATGGACATAGATGAAGGACAGGATGTTGCTGAAGAAGAGATTTTTGAACAAGAAGAAAAGAAATCTGCTGTTCGTTCAAGATCAAGAACGCGTTCAAGATCTCGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'11-17,'11-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTAGTACCAGAATCTGTGAACA
R:
TGAACGAGATCTTGAACGCGT
Band lengths:
229-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]