MmuEX6074964 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3171103-3177723:+
Coord C1 exon
chr17:3171103-3171220
Coord A exon
chr17:3177093-3177224
Coord C2 exon
chr17:3177611-3177723
Length
132 bp
Sequences
Splice sites
3' ss Seq
CATTTGTTTGTTCTCAGCAGGTA
3' ss Score
7.92
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTCTCACGTTTCAGAGTCTGTGAACAACTCCATCTTCCATCAGATAGCAGAACAGCTGCAGCAGCAGAACTTGGAGCAGTTGCGACAGCAGCTCCTGGAGCAGCAGCAGCCTCAGAAG
Seq A exon
GTAACTCCTCAAGATAGCCAGGAGGGGACATTTGGGTCTGAGCACTCAGCTTCTCCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAATTTAGATGATTCCATAGACATTCAGCAACAG
Seq C2 exon
GATATGGATATTGATGAAGGGCAAGATGTTGTTGAAGAGGAGATCTTTGAACCAGAAGCTAAGAAAGTAGCTGTTCGCTCAAGATCAAGAACTCATTCACGATCTCGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'17-23,'17-22,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086487=DUF1777=PU(15.3=39.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCACGTTTCAGAGTCTGTGA
R:
TCGAGATCGTGAATGAGTTCTTGA
Band lengths:
226-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: