GgaEX1050991 @ galGal4
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49621599-49631973:+
Coord C1 exon
chr3:49621599-49621716
Coord A exon
chr3:49623648-49623779
Coord C2 exon
chr3:49631829-49631973
Length
132 bp
Sequences
Splice sites
3' ss Seq
TATAATTATCTGCTATTTAGGCA
3' ss Score
6.15
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCTTTAGTACCAGAATCTGTGAACAACTCACTTTTTCACCAACTAGCTGAACAACTGCAGCAACAAAATTTAGAACATCTCAGACAACAACTTCTGGAGCAACAGCAGCCTCAAAAG
Seq A exon
GCAAGCCCTGAGGAAAATCAGGAAGGGAATTTTGGTTCAGAGCACTCTGCATCACCATCACAAGGGAGCAGTCAACAGCAGTTTTTAGAAGCAGAAACAAATGTAGATGATTCAATGGATATTCAACAACAG
Seq C2 exon
ATTCCAGTAGCTCCAGCTGTGCCTGCTGTTAGCTTAGTTCCACCTGCATTTCCTGTCACAATGTCTGTCCCTCCTCCTGGTTATAGTGCCATTCCTCCTCCACCCTTCTTGCGAGCAAGTTTCAATCCTTCACAGCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635_MULTIEX1-6/13=5-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=1.000 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAATCTGTGAACAACTCA
R:
GGAGGTGGCTGTGAAGGATTG
Band lengths:
252-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]