HsaEX6005927 @ hg38
Exon Skipping
Gene
ENSG00000156304 | SCAF4
Description
SR-related CTD associated factor 4 [Source:HGNC Symbol;Acc:HGNC:19304]
Coordinates
chr21:31694204-31696221:-
Coord C1 exon
chr21:31696113-31696221
Coord A exon
chr21:31694813-31694980
Coord C2 exon
chr21:31694204-31694289
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTAAAAATGAAAGGTT
3' ss Score
2.56
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGGCTTTCCTGGAGATGGCATGCAGCAGCCAGCATACACACAGCATCAAAATATGGATCAGTTTCAGCCACGAATGATGGGAATACAACAGGATCCAATGCACCATCAG
Seq A exon
GTTCCACTTCCTCCTAATGGACAAATGCCAGGATTTGGACTTCTTCCTACACCTCCATTTCCTCCCATGGCTCAGCCTGTGATTCCTCCAACTCCACCAGTGCAGCAGCCTTTCCAAGCTTCTTTTCAGGCACAAAATGAACCACTTACACAGAAGCCGCATCAGCAG
Seq C2 exon
GAAATGGAAGTAGAACAACCTTGTATTCAAGAGGTTAAGCGACATATGTCTGATAACAGAAAGTCAAGATCTAGGTCAGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304-'16-23,'16-21,17-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTCCTGGAGATGGCATG
R:
CTGGATGCTGACCTAGATCTTGAC
Band lengths:
194-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains