RnoEX6056498 @ rn6
Exon Skipping
Gene
ENSRNOG00000002104 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:RGD Symbol;Acc:727896]
Coordinates
chr11:30393138-30395350:-
Coord C1 exon
chr11:30395242-30395350
Coord A exon
chr11:30393615-30394010
Coord C2 exon
chr11:30393138-30393211
Length
396 bp
Sequences
Splice sites
3' ss Seq
ATGCTTCTTTAAAACCAAAGGTC
3' ss Score
3.57
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TGGGTACCCTGGAGACGGCATGCAGCAGCCAGCGTACACACAGCATCAAAATGTGGACCAGTTTCAACCTCGAATGATGGCACTGCAGCAGGATAGCATGCAGCATCAG
Seq A exon
GTCCCACTTCCTCCTAACGGACAGATGCCAGGATTTGGGCTTCTCTCTGCACCACCTCCATTTCCTCCCATGCCTCAGCCCGGGATGCCCCAGCCCGGGATGCCTCAGCCCGGGATGCCTCAGCCTGGGTTGTCTCAGCCTGGGTTGCCCCAGCCCGGGATGCCTCAGCCCGGGATGCCTCAGCCCGGGATGCCCCAGCCCGGGATGCCCCAGCCTGGGTTGCCTCAGCCTGGGTTGCCCCAGCCCGGGATGCCTCAGCCCGGGATGCCCCAGCCCGGGATGCCCCAGCCCGGGATGCCCCAGCCTGGAATGCCTCCAACTCCACCAGTACAGCCAACTTTCCAACCTACTTTTCAACCACAAAATGAACCCCATTCACAAAAGCCACATCAGCAG
Seq C2 exon
GAAATGGAAGTAGAGCAGCCTTGTGTCACAGAGGTTAAGCGGCATGTGCCTGAGAGCAGAAAGTCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002104-'17-18,'17-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]