MmuEX6063301 @ mm10
Exon Skipping
Gene
ENSMUSG00000022983 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:MGI Symbol;Acc:MGI:2146350]
Coordinates
chr16:90249639-90251983:-
Coord C1 exon
chr16:90251875-90251983
Coord A exon
chr16:90250057-90250437
Coord C2 exon
chr16:90249639-90249712
Length
381 bp
Sequences
Splice sites
3' ss Seq
ACTCTTCTTTAAAATGAAAGGTT
3' ss Score
3.06
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
TGGGTACCCTGGAGATGGCGTGCAGCAGCCAGCATACACACAGCATCAAAGTATGGACCAGTTTCAGCCTCGAATGATGCCAATACAGCAGGATACGATGCACCATCAG
Seq A exon
GTTCCACTTCCTCCTAATGGACAGATGCCAGGATTTGGGCTTCTTTCTGCACCACCTCCATTTCCTCCCATGCCTCAGCCGGGGATGCCGCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTACAATGCCACAGCCAGGGATGCCTCAGCCAGGGATGCCTCAGCCTGGGATGGCTCAGCCGGGATTGGCACAGCCGGGGATGGCTCAGCCTGGGATGCCTCAGCCTGCCATGCCTCAGCCTGCCATGCCTCAGCCGGGGATGGCTCAGCCTGGGGTTTCTCCAGCTCCACCAGTACAGCCAACTTTCCAATCAACTTTTCAGCCACAAAATGAACCCCATTCACAAAAACCACATCAGCAG
Seq C2 exon
GAAATGGAAGTAGAGCAGCCTTGTGTTACAGAGGTTAAGCGGCATGTGCCCGAGAGCAGAAAGTCGAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022983-'15-18,'15-15,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types