GgaEX1052030 @ galGal4
Exon Skipping
Gene
ENSGALG00000003661 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr17:6504293-6509602:-
Coord C1 exon
chr17:6509472-6509602
Coord A exon
chr17:6505744-6505882
Coord C2 exon
chr17:6504293-6504392
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATAATTTATTTTTAACTCAGTTA
3' ss Score
3.09
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GATACTGGGTGGAAAACAGCTATTTGTCCGGACTACTGCCCCAACATGTATGAAGATATGCAAACACTGGCTAATGTGCTTCAGTCTGATATTGGCAGAGATATGCGTGTCCATCACAGCACGTTTCTGTG
Seq A exon
TTAGATCCTGTGGATATGGAATTGTGTTCCCAGGATGAAGATGCTGAAGGCAATACTATAGCTACTACAAGAACAGAGGAAATGGAAATAGATCATGCTGAGAGCCTTCAGCAGAATGATACCTTGACTGTTGTGAAGT
Seq C2 exon
CTGGCACAAGAGTGGGTAGAAAACCAGAAGATGAAAGACAAGACTTACTACTTACACTTACAGAACTTCTGTGCTGATTTGAATACGGCAGAGTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003661_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACTGGGTGGAAAACAGCT
R:
AACTCTGCCGTATTCAAATCAGCA
Band lengths:
226-365
Functional annotations
There are 1 annotated functions for this event
PMID: 16524884
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, two hybrid. ELM ID: ELMI002787; ELM sequence: QVIIISDSDDDDDE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]