GgaEX1054468 @ galGal3
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
NA
Coordinates
chr9:5941649-5942170:+
Coord C1 exon
chr9:5941649-5941765
Coord A exon
chr9:5941854-5941970
Coord C2 exon
chr9:5942044-5942170
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTCCCGTTCCCCTCCTGCAGCCC
3' ss Score
11.42
5' ss Seq
TAGGTACGG
5' ss Score
7.82
Exon sequences
Seq C1 exon
CGGTGCCGTCCCCCTGTGACTCTGAGCCCTGCCTGAACGGGGGCTCCTGCGAGACTCAGGACGACTCCTACACCTGCGAGTGTCCCTCAGGCTTCCTGGGCAAGCACTGCGAGAGAG
Seq A exon
CCCGGCCACGGCTCTGCAGCACGGCGCCGTGCCGCAACGGGGGCACATGCAAGGAGGCCGACGGCGAGTACCACTGCGCCTGCCCCTACCGCTTCACCGGCCGCCACTGCGAGATAG
Seq C2 exon
GTAAACCGGACCCCTGTGCCTCAGGGCCCTGCCAGAACGGGGGCACCTGCTTCCACTACATCGGCAAGTACAAGTGTGACTGTGCCCCGGGCTACGCTGGACGGCACTGCGAGATCGGNACGTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5)
A:
PF0000822=EGF=WD(100=77.5)
C2:
PF0000822=EGF=WD(100=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCCCTGTGACTCTGAG
R:
CGATCTCGCAGTGCCGTC
Band lengths:
228-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]