RnoEX6041013 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100412791-100414576:+
Coord C1 exon
chr9:100412791-100412907
Coord A exon
chr9:100414166-100414282
Coord C2 exon
chr9:100414460-100414576
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGTCTTTCCATACAGCCC
3' ss Score
11.68
5' ss Seq
TTGGTGCGG
5' ss Score
3.8
Exon sequences
Seq C1 exon
CTCTGCCCTCGCCCTGCGACTCAGACCCATGCTTTAATGGAGGTTCCTGTGACGCCCACGAGGACTCCTACACGTGCGAGTGCCCTCGTGGATTCCATGGCAGGCACTGCGAGAAAG
Seq A exon
CCCGGCCACACCTGTGCAGCTCAGGGCCCTGCCGGAATGGGGGCACATGCAAGGAGACTGGTGACGAGTACCGCTGCACCTGCCCTTACCGGTTCACTGGGAGACACTGTGAGATTG
Seq C2 exon
GAAAGCCAGACTCCTGTGCCTCTGGCCCCTGTCACAACGGTGGCACTTGTTTCCACTACATTGGCAAATACAAGTGTGACTGCCCTCCAGGCTTCTCTGGTCGGCACTGTGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548-'13-15,'13-13,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=77.5)
A:
PF0000822=EGF=WD(100=77.5)
C2:
PF0000822=EGF=WD(100=77.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACTCAGACCCATGCTTTA
R:
TATCTCACAGTGCCGACCAGA
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]