DreEX6021994 @ danRer10
Exon Skipping
Gene
ENSDARG00000044433 | sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:ZFIN;Acc:ZDB-GENE-100913-1]
Coordinates
chr6:27478891-27479767:+
Coord C1 exon
chr6:27478891-27479022
Coord A exon
chr6:27479356-27479475
Coord C2 exon
chr6:27479651-27479767
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTGGTGCGTGTGTTTTTCAGTAC
3' ss Score
8.75
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
AAGTAACACAAACACCCTGCAGTAACAACAGGCCATGTCCAGATGGAGGTCCCTGCTTGGAATATGGTGGCACATACCTTTGCACCTGCCAAACTGGTGCCGAATTTGATCACAAGGATTTCTACCCCTATG
Seq A exon
TACAGCCCCAATCAGCCTGCGACTCCTCTCCGTGTCAGAATGGAGGGTATTGCTATGAAAGAGATGGAGACTACATCTGCGAGTGCAAACACGGCTACAGAGGCAAGCATTGCGAAAGAG
Seq C2 exon
TCAGATTAAGTATCTGTGCTTCTAGTCCCTGTCGTAATGGAGGTTCTTGTAAAGAAGAAGCTGACAGCTACCATTGTGTCTGCCCCTACCGTTTCACAGGGAAACACTGTGAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044433-'13-16,'13-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=75.6)
C2:
PF0000822=EGF=WD(100=77.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAACACCCTGCAGTAACA
R:
CACTTCACAGTGTTTCCCTGTGA
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]