RnoEX6041014 @ rn6
Exon Skipping
Gene
ENSRNOG00000023548 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:RGD Symbol;Acc:1566079]
Coordinates
chr9:100412148-100414282:+
Coord C1 exon
chr9:100412148-100412261
Coord A exon
chr9:100412791-100412907
Coord C2 exon
chr9:100414166-100414282
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTCCTCTCTTACCCTAGCTC
3' ss Score
8.01
5' ss Seq
AAGTGACTA
5' ss Score
-8.63
Exon sequences
Seq C1 exon
AAGTCACAGCCACGCCCTGCAACATGAACACTCAGTGTCCAGATGGAGGCTACTGCATGGAGTATGGCGGAAGCTACCTATGTGTCTGCCACACGGACCACAACATCAGCCATT
Seq A exon
CTCTGCCCTCGCCCTGCGACTCAGACCCATGCTTTAATGGAGGTTCCTGTGACGCCCACGAGGACTCCTACACGTGCGAGTGCCCTCGTGGATTCCATGGCAGGCACTGCGAGAAAG
Seq C2 exon
CCCGGCCACACCTGTGCAGCTCAGGGCCCTGCCGGAATGGGGGCACATGCAAGGAGACTGGTGACGAGTACCGCTGCACCTGCCCTTACCGGTTCACTGGGAGACACTGTGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023548-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=77.5)
C2:
PF0000822=EGF=WD(100=77.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCACAGCCACGCCCT
R:
TCTCACAGTGTCTCCCAGTGA
Band lengths:
228-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]