GgaEX1054467 @ galGal4
Exon Skipping
Gene
ENSGALG00000006039 | SNED1
Description
sushi, nidogen and EGF-like domains 1 [Source:HGNC Symbol;Acc:HGNC:24696]
Coordinates
chr9:4398030-4400527:+
Coord C1 exon
chr9:4398030-4398143
Coord A exon
chr9:4398243-4398359
Coord C2 exon
chr9:4400414-4400527
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTTTAATTTGGCTTTGCAGCGG
3' ss Score
8.8
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AAGTGACCACCACACCGTGCAATGTGAACACGCAGTGTCCAGATGGCGGCTACTGCATGGAGTACGGCGGGAGCTACCTGTGCGTGTGCCACACCGACTACGGCACCAACCACA
Seq A exon
CGGTGCCGTCCCCCTGTGACTCTGAGCCCTGCCTGAACGGGGGCTCCTGCGAGACTCAGGACGACTCCTACACCTGCGAGTGTCCCTCAGGCTTCCTGGGCAAGCACTGCGAGAGAG
Seq C2 exon
AAGTTGATGAGTGCCAATCAGAGCCCTGTAAGAACGGTGGCACCTGCCGGGACCTCCTGGGCTCCTTTGCCTGCTCCTGTCCCGCGGGCTTCATGGGCACCCAGTGCGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006039_MULTIEX1-5/12=4-11
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=77.5)
C2:
PF0000822=EGF=WD(100=79.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACCACACCGTGC
R:
CACTGGGTGCCCATGAAGC
Band lengths:
218-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]