MmuEX6026477 @ mm9
Exon Skipping
Gene
ENSMUSG00000047793 | Sned1
Description
sushi, nidogen and EGF-like domains 1 [Source:MGI Symbol;Acc:MGI:3045960]
Coordinates
chr1:95168432-95170742:+
Coord C1 exon
chr1:95168432-95168545
Coord A exon
chr1:95169069-95169185
Coord C2 exon
chr1:95170626-95170742
Length
117 bp
Sequences
Splice sites
3' ss Seq
CCTATCCCCTCTTCCCCCAGCTC
3' ss Score
10
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
AAGTCACAGCCACGCCCTGCAACATGAACACGCAGTGTCCAGATGGAGGCTACTGCATGGAGTATGGCGGAAGCTACCTATGTGTCTGCCACACAGACCACAACATCAGCCACT
Seq A exon
CTCTGCCATCCCCCTGCGACTCAGACCCTTGCTTTAATGGAGGTTCCTGTGACGCCCACGAGGACTCCTACACGTGCGAGTGCCCTCGTGGATTCCACGGCAGGCACTGTGAGAAAG
Seq C2 exon
CCCGGCCACACCTGTGCAGCTCAGGGCCCTGCCGGAATGGAGGCACATGCAAGGAAATGGGCGACGAGTACCGCTGCACCTGCCCTTATAGATTCACTGGGAGACACTGTGAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047793-'13-15,'13-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=77.5)
C2:
PF0000822=EGF=WD(100=77.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCACAGCCACGCCCT
R:
TCTCACAGTGTCTCCCAGTGA
Band lengths:
228-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: